STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109996403RAB3D, member RAS oncogene family, b. (222 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 0.959
ENSLBEP00000031587
C2 domain-containing protein.
    
 0.959
ENSLBEP00000031622
PDZ domain-containing protein.
    
 0.959
ephx1
Epoxide hydrolase; Biotransformation enzyme that catalyzes the hydrolysis of arene and aliphatic epoxides to less reactive and more water soluble dihydrodiols by the trans addition of water. Belongs to the peptidase S33 family.
     
 0.713
LOC109985771
Synaptotagmin IIa.
   
 0.708
syt1
Synaptotagmin Ia.
   
 0.708
SYT2
Synaptotagmin 2.
   
 0.708
LOC109988704
Synaptotagmin Vb.
   
 0.708
ENSLBEP00000006879
Calcium/calmodulin-dependent serine protein kinase b.
    
 0.698
LOC110002836
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.698
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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