STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109989505Protein YIPF. (251 aa)    
Predicted Functional Partners:
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.870
yif1a
Yip1 interacting factor homolog A (S. cerevisiae).
   
 
 0.818
yif1b
Yip1 interacting factor homolog B (S. cerevisiae).
   
 
 0.818
yipf3
Yip1 domain family, member 3.
   
 
 0.770
LOC109998086
Protein YIPF.
   
 
 0.728
yipf1
Protein YIPF.
   
 
 0.728
ENSLBEP00000002046
Uncharacterized protein.
    
 0.713
spata5l1
Spermatogenesis associated 5-like 1.
    
 0.713
LOC110004984
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 0.713
SPATA5
Spermatogenesis associated 5.
    
 0.713
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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