STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smarcad1Uncharacterized protein. (1058 aa)    
Predicted Functional Partners:
exo1
Exonuclease 1.
    
 
 0.876
trim33
Tripartite motif containing 33.
   
 
 0.829
LOC110005259
Uncharacterized protein.
   
 
 0.829
LOC109988145
Uncharacterized protein.
   
 
 0.829
MSH2
MutS homolog 2.
   
 
 0.805
ENSLBEP00000000333
Uncharacterized protein.
   
 
 0.805
msh2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 
 0.805
ENSLBEP00000013599
Uncharacterized protein.
   
 
 0.793
ENSLBEP00000020673
RecQ helicase-like 4.
   
 
 0.744
blm
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 
 0.744
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.