LOC110003697 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110003697

Single-pass membrane protein with aspartate-rich tail 1a. (122 aa)

Predicted Functional Partners:

micu2

0.970

mcu

0.945

MCUB

0.945

ENSLBEP00000016323

0.935

LOC110001157

0.935

ENSLBEP00000024180

0.935

edf1

0.776

LOC109981084

0.760

micu3

0.760

spg7

0.741

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000016323	ENSLBEP00000024180	ENSLBEP00000016323	ENSLBEP00000024180	Uncharacterized protein.	EF-hand domain-containing protein.	0.522
ENSLBEP00000016323	LOC109981084	ENSLBEP00000016323	ENSLBEP00000021348	Uncharacterized protein.	Mitochondrial calcium uptake family, member 3b.	0.822
ENSLBEP00000016323	LOC110003697	ENSLBEP00000016323	ENSLBEP00000010655	Uncharacterized protein.	Single-pass membrane protein with aspartate-rich tail 1a.	0.935
ENSLBEP00000016323	MCUB	ENSLBEP00000016323	ENSLBEP00000019611	Uncharacterized protein.	Mitochondrial calcium uniporter dominant negative beta subunit.	0.946
ENSLBEP00000016323	mcu	ENSLBEP00000016323	ENSLBEP00000003424	Uncharacterized protein.	Mitochondrial calcium uniporter.	0.946
ENSLBEP00000016323	micu2	ENSLBEP00000016323	ENSLBEP00000014053	Uncharacterized protein.	Mitochondrial calcium uptake 2.	0.977
ENSLBEP00000016323	micu3	ENSLBEP00000016323	ENSLBEP00000035543	Uncharacterized protein.	Mitochondrial calcium uptake family, member 3a.	0.822
ENSLBEP00000016323	spg7	ENSLBEP00000016323	ENSLBEP00000004211	Uncharacterized protein.	SPG7 matrix AAA peptidase subunit, paraplegin.	0.743
ENSLBEP00000024180	ENSLBEP00000016323	ENSLBEP00000024180	ENSLBEP00000016323	EF-hand domain-containing protein.	Uncharacterized protein.	0.522
ENSLBEP00000024180	LOC109981084	ENSLBEP00000024180	ENSLBEP00000021348	EF-hand domain-containing protein.	Mitochondrial calcium uptake family, member 3b.	0.822
ENSLBEP00000024180	LOC110003697	ENSLBEP00000024180	ENSLBEP00000010655	EF-hand domain-containing protein.	Single-pass membrane protein with aspartate-rich tail 1a.	0.935
ENSLBEP00000024180	MCUB	ENSLBEP00000024180	ENSLBEP00000019611	EF-hand domain-containing protein.	Mitochondrial calcium uniporter dominant negative beta subunit.	0.946
ENSLBEP00000024180	mcu	ENSLBEP00000024180	ENSLBEP00000003424	EF-hand domain-containing protein.	Mitochondrial calcium uniporter.	0.946
ENSLBEP00000024180	micu2	ENSLBEP00000024180	ENSLBEP00000014053	EF-hand domain-containing protein.	Mitochondrial calcium uptake 2.	0.977
ENSLBEP00000024180	micu3	ENSLBEP00000024180	ENSLBEP00000035543	EF-hand domain-containing protein.	Mitochondrial calcium uptake family, member 3a.	0.822
ENSLBEP00000024180	spg7	ENSLBEP00000024180	ENSLBEP00000004211	EF-hand domain-containing protein.	SPG7 matrix AAA peptidase subunit, paraplegin.	0.743
LOC109981084	ENSLBEP00000016323	ENSLBEP00000021348	ENSLBEP00000016323	Mitochondrial calcium uptake family, member 3b.	Uncharacterized protein.	0.822
LOC109981084	ENSLBEP00000024180	ENSLBEP00000021348	ENSLBEP00000024180	Mitochondrial calcium uptake family, member 3b.	EF-hand domain-containing protein.	0.822
LOC109981084	LOC110001157	ENSLBEP00000021348	ENSLBEP00000016669	Mitochondrial calcium uptake family, member 3b.	Uncharacterized protein.	0.822
LOC109981084	LOC110003697	ENSLBEP00000021348	ENSLBEP00000010655	Mitochondrial calcium uptake family, member 3b.	Single-pass membrane protein with aspartate-rich tail 1a.	0.760