STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109999321Uncharacterized protein. (969 aa)    
Predicted Functional Partners:
LOC110006100
Uncharacterized protein.
   
  0.919
ENSLBEP00000013020
RNA binding motif protein 39b.
   
  0.919
LOC109975248
Uncharacterized protein.
   
  0.919
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.884
setd2
SET domain containing 2, histone lysine methyltransferase.
   
 0.883
LOC109989387
RAN binding protein 2.
   
 0.882
rbm25
RNA binding motif protein 25b.
   
 
 0.876
ak9
Adenylate kinase 9.
    
  0.871
sf3b1
Splicing factor 3b, subunit 1.
   
   0.864
prpf4b
Pre-mRNA processing factor 4Bb.
   
   0.850
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.