STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp44Ubiquitin carboxyl-terminal hydrolase. (748 aa)    
Predicted Functional Partners:
taf10
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.965
trrap
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
    
 0.964
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.962
LOC109995253
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.960
rps27a
Ribosomal protein S27a.
    
 0.959
sgf29
SAGA complex associated factor 29.
   
 0.939
tada2b
Transcriptional adapter.
    
 0.927
tada2a
Transcriptional adapter.
    
 0.927
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.920
supt3h
Uncharacterized protein.
    
 0.920
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
Server load: low (22%) [HD]