STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HIGD1AHIG1 hypoxia inducible domain family member 1A. (120 aa)    
Predicted Functional Partners:
LOC109992932
Cytochrome c oxidase subunit 6A, mitochondrial.
   
 
 0.933
LOC109982060
Cytochrome c oxidase subunit 6A, mitochondrial.
   
 
 0.933
LOC109978647
Heme-binding protein soul4.
    
 
 0.858
LOC109980887
Ubiquinol-cytochrome c reductase core protein 1.
   
 
 0.852
pmpcb
Peptidase (mitochondrial processing) beta; Belongs to the peptidase M16 family.
   
 
 0.852
ENSLBEP00000002245
Uncharacterized protein.
   
 
 0.798
LOC110006238
Uncharacterized protein.
   
 
 0.798
LOC110006239
Cytochrome c oxidase subunit 5B.
   
 
 0.798
ENSLBEP00000017634
Uncharacterized protein.
   
 
 0.798
ENSLBEP00000017768
Uncharacterized protein.
   
 
 0.798
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.