STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atp8b1Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1249 aa)    
Predicted Functional Partners:
ENSLBEP00000004591
NDK domain-containing protein.
   
 0.858
ENSLBEP00000030295
annotation not available
   
 0.858
pln
Si:ch211-270g19.5.
    
 0.789
LOC109994572
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
   
 0.769
LOC109996893
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
   
 0.709
tmem30a
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
   
 0.709
TMEM30A
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
   
 0.709
LOC110000806
Cell cycle control protein; Belongs to the CDC50/LEM3 family.
   
 0.709
atp7a
ATPase copper transporting alpha.
   
 0.641
LOC109984154
ATPase copper transporting beta.
   
 0.641
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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