STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109983146Kelch domain containing 8A. (351 aa)    
Predicted Functional Partners:
ENSLBEP00000019863
Uncharacterized protein.
    
   0.689
ENSLBEP00000022422
Uncharacterized protein.
    
   0.689
txndc9
Thioredoxin domain containing 9.
    
   0.605
TXNDC9
Thioredoxin domain containing 9.
    
   0.605
cacul1
CDK2 associated cullin domain 1; Belongs to the cullin family.
    
 0.596
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.596
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.596
LOC109989856
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.596
cct5
Chaperonin containing TCP1, subunit 5 (epsilon).
    
   0.590
ENSLBEP00000020253
Uncharacterized protein.
  
 
  0.573
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.