STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLBEP00000012932Uncharacterized protein. (272 aa)    
Predicted Functional Partners:
pink1
PTEN induced kinase 1.
    
 0.918
gak
Cyclin G associated kinase.
   
 0.899
prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 0.887
oma1
OMA1 zinc metallopeptidase.
    
 0.881
ENSLBEP00000004755
Uncharacterized protein.
    
 
 0.825
ENSLBEP00000004788
Uncharacterized protein.
    
 
 0.825
LOC109990056
Intersectin 2a.
    
 
 0.825
LOC109987944
Intersectin 1 (SH3 domain protein).
    
 
 0.749
LOC109990793
Mitochondrial elongation factor 2.
    
 
 0.739
pgam5
PGAM family member 5, serine/threonine protein phosphatase, mitochondrial.
    
 0.703
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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