STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109980932Si:dkey-222n6.2; Belongs to the intermediate filament family. (423 aa)    
Predicted Functional Partners:
ENSLBEP00000020184
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.897
bag3
BCL2 associated athanogene 3.
    
 
 0.710
rps27a
Ribosomal protein S27a.
    
  0.688
ube2w
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.664
prkn
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 
 0.626
birc6
Baculoviral IAP repeat containing 6.
    
 0.588
ENSLBEP00000032852
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.588
ENSLBEP00000027417
Ataxin 3.
    
 
 0.586
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
    
 0.579
ENSLBEP00000010675
Uncharacterized protein.
    
 0.577
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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