LOC109998709 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109998709

Si:dkey-219c3.2. (972 aa)

Predicted Functional Partners:

taf12

0.980

ENSLBEP00000012494

0.980

taf7

0.980

taf2

0.980

taf6

0.980

LOC109985255

0.980

LOC109995253

0.970

taf10

0.970

taf13

0.970

taf6l

0.960

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000012494	LOC109985255	ENSLBEP00000012494	ENSLBEP00000034988	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit.	0.999
ENSLBEP00000012494	LOC109995253	ENSLBEP00000012494	ENSLBEP00000007130	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSLBEP00000012494	LOC109998709	ENSLBEP00000012494	ENSLBEP00000013694	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Si:dkey-219c3.2.	0.980
ENSLBEP00000012494	taf10	ENSLBEP00000012494	ENSLBEP00000007255	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSLBEP00000012494	taf12	ENSLBEP00000012494	ENSLBEP00000003875	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSLBEP00000012494	taf13	ENSLBEP00000012494	ENSLBEP00000027872	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 13.	0.999
ENSLBEP00000012494	taf2	ENSLBEP00000012494	ENSLBEP00000030157	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSLBEP00000012494	taf6	ENSLBEP00000012494	ENSLBEP00000033720	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
ENSLBEP00000012494	taf6l	ENSLBEP00000012494	ENSLBEP00000025139	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.991
ENSLBEP00000012494	taf7	ENSLBEP00000012494	ENSLBEP00000013972	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC109985255	ENSLBEP00000012494	ENSLBEP00000034988	ENSLBEP00000012494	Transcription initiation factor TFIID subunit.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC109985255	LOC109995253	ENSLBEP00000034988	ENSLBEP00000007130	Transcription initiation factor TFIID subunit.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC109985255	LOC109998709	ENSLBEP00000034988	ENSLBEP00000013694	Transcription initiation factor TFIID subunit.	Si:dkey-219c3.2.	0.980
LOC109985255	taf10	ENSLBEP00000034988	ENSLBEP00000007255	Transcription initiation factor TFIID subunit.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC109985255	taf12	ENSLBEP00000034988	ENSLBEP00000003875	Transcription initiation factor TFIID subunit.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC109985255	taf13	ENSLBEP00000034988	ENSLBEP00000027872	Transcription initiation factor TFIID subunit.	TATA-box binding protein associated factor 13.	0.999
LOC109985255	taf2	ENSLBEP00000034988	ENSLBEP00000030157	Transcription initiation factor TFIID subunit.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC109985255	taf6	ENSLBEP00000034988	ENSLBEP00000033720	Transcription initiation factor TFIID subunit.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC109985255	taf6l	ENSLBEP00000034988	ENSLBEP00000025139	Transcription initiation factor TFIID subunit.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.990
LOC109985255	taf7	ENSLBEP00000034988	ENSLBEP00000013972	Transcription initiation factor TFIID subunit.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999