STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109989513Pleckstrin homology domain containing, family H (with MyTH4 domain) member 2. (1400 aa)    
Predicted Functional Partners:
ENSLBEP00000024099
Pleckstrin homology domain containing, family F (with FYVE domain) member 2.
      
 0.552
neurl1b
Neuralized E3 ubiquitin protein ligase 1B.
      
 0.524
fam43a
Family with sequence similarity 43 member A.
      
 0.520
rfc3
Replication factor C (activator 1) 3.
   
  
 0.488
PLEKHG1
Pleckstrin homology and RhoGEF domain containing G1.
      
 0.475
snx29
Sorting nexin 29.
      
 0.475
nop53
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
      
 0.472
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.