STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc12a4Solute carrier family 12 member 4. (1094 aa)    
Predicted Functional Partners:
LOC110003724
Nudix (nucleoside diphosphate linked moiety X)-type motif 12.
   
  0.667
LOC110004597
ANK_REP_REGION domain-containing protein.
   
  0.667
LOC109983860
2-epi-5-epi-valiolone synthase.
   
 0.625
ENSLBEP00000035039
Si:ch211-153b23.3.
   
 0.625
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.578
mst1r
Macrophage stimulating 1 receptor b.
    
  0.578
LOC109980643
Macrophage stimulating 1 receptor a.
    
  0.578
ripk4
Receptor-interacting serine-threonine kinase 4.
   
 0.560
sod2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
    
 0.534
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
  
 0.527
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.