STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109988360Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. (281 aa)    
Predicted Functional Partners:
LOC109981807
Cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10.
   
 
 0.952
LOC109990749
Cytochrome c oxidase assembly homolog 15 (yeast).
 
  
 
 0.922
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.881
hmox2
Heme oxygenase 2b.
     
 0.841
ndufv2
NADH:ubiquinone oxidoreductase core subunit V2.
   
  
 0.837
LOC109994364
Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.
     
 0.833
hmox1
Heme oxygenase; Heme oxygenase cleaves the heme ring at the alpha methene bridge to form biliverdin. Biliverdin is subsequently converted to bilirubin by biliverdin reductase.
     
 0.833
LOC109998381
Cytochrome c-1.
   
 
 0.759
mrpl35
Mitochondrial ribosomal protein L35.
   
  
 0.670
ndufa9
NADH:ubiquinone oxidoreductase subunit A9a; Belongs to the 3-beta-HSD family.
   
 
 0.660
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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