STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irx5Iroquois homeobox 5a. (452 aa)    
Predicted Functional Partners:
LOC109988666
Homeobox domain-containing protein.
    
 
 0.674
LOC109999239
Teashirt zinc finger homeobox 3b.
    
 0.648
irx3
Iroquois homeobox 3a.
  
  
0.645
SRF
Serum response factor.
   
 
 0.627
srf
Serum response factor b.
   
 
 0.627
LOC109984540
Teashirt zinc finger homeobox 1.
    
 0.615
LOC109988319
Teashirt zinc finger homeobox 3a.
    
 0.597
TSHZ1
Teashirt zinc finger homeobox 1.
    
 0.596
ENSLBEP00000026247
Teashirt zinc finger homeobox 2.
    
 0.596
pbx1
Homeobox domain-containing protein.
    
 0.539
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.