STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irx3Iroquois homeobox 3a. (428 aa)    
Predicted Functional Partners:
LOC109988666
Homeobox domain-containing protein.
    
 
 0.686
LOC109999239
Teashirt zinc finger homeobox 3b.
    
 0.680
SRF
Serum response factor.
   
 
 0.645
srf
Serum response factor b.
   
 
 0.645
irx5
Iroquois homeobox 5a.
  
  
0.645
ENSLBEP00000017206
Homeobox domain-containing protein.
  
  
0.639
ENSLBEP00000011618
Tudor domain-containing protein.
    
 
 0.631
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 
 0.631
irx2
Iroquois homeobox 2a.
   
  
0.615
LOC109984540
Teashirt zinc finger homeobox 1.
    
 0.615
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.