STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109989562H6 family homeobox 4. (261 aa)    
Predicted Functional Partners:
ppp1r21
Protein phosphatase 1, regulatory subunit 21.
    
   0.755
LOC109999579
Zgc:112083.
    
   0.678
hinfp
Histone H4 transcription factor.
    
   0.678
dtnb
Dystrobrevin, beta b.
   
   0.641
dtna
Dystrobrevin.
   
   0.641
LOC109988412
Dystrobrevin.
   
   0.638
tbx1
T-box transcription factor 1.
    
 
 0.561
LOC109991924
Uncharacterized protein.
    
 
 0.561
LOC109983667
T-box transcription factor 18.
    
 
 0.500
tbx15
T-box transcription factor 15.
    
 
 0.500
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.