STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109986726Peroxisome proliferator-activated receptor gamma, coactivator 1 beta. (736 aa)    
Predicted Functional Partners:
NCBP1
Nuclear cap binding protein subunit 1.
    
   0.901
ENSLBEP00000003951
Uncharacterized protein.
    
 0.889
srebf1
Sterol regulatory element binding transcription factor 1.
    
 0.889
LOC109991030
Estrogen-related receptor alpha.
    
 0.886
mycn
MYCN proto-oncogene, bHLH transcription factor.
    
 0.872
LOC109996351
BHLH domain-containing protein.
     
 0.855
ENSLBEP00000017487
MLX interacting protein.
     
 0.855
nrf1
Nuclear respiratory factor 1.
     
 0.849
ncbp2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 
 0.821
ESRRB
Estrogen-related receptor beta.
    
 0.719
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.