STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bace1Beta-secretase 1; Belongs to the peptidase A1 family. (529 aa)    
Predicted Functional Partners:
LOC109991882
Uncharacterized protein.
    
 0.854
LOC109998453
Golgi associated, gamma adaptin ear containing, ARF binding protein 1.
    
 0.854
LOC109995134
Amyloid beta (A4) precursor protein b.
    
 0.816
APP
Amyloid beta precursor protein.
    
 0.816
ENSLBEP00000033230
BPTI/Kunitz inhibitor domain-containing protein.
    
 0.816
rtn1
Reticulon.
   
 0.787
LOC109996759
Reticulon.
   
 0.781
rtn4
Reticulon.
   
 0.757
ENSLBEP00000013711
Reticulon.
   
 0.757
ENSLBEP00000025523
Reticulon.
   
 0.757
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.