LOC109996004 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC109996004

Uncharacterized protein. (600 aa)

Predicted Functional Partners:

ecsit

0.970

eci2

0.968

timmdc1

0.945

ndufaf3

0.945

ndufs2

0.941

etfa

0.940

ndufs3

0.939

ENSLBEP00000006134

0.936

ndufaf1

0.936

cpt2

0.935

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000006134	LOC109996004	ENSLBEP00000006134	ENSLBEP00000017378	CIA30 domain-containing protein.	Uncharacterized protein.	0.936
ENSLBEP00000006134	ecsit	ENSLBEP00000006134	ENSLBEP00000025446	CIA30 domain-containing protein.	ECSIT signalling integrator.	0.991
ENSLBEP00000006134	ndufaf3	ENSLBEP00000006134	ENSLBEP00000027297	CIA30 domain-containing protein.	NADH:ubiquinone oxidoreductase complex assembly factor.	0.989
ENSLBEP00000006134	ndufs2	ENSLBEP00000006134	ENSLBEP00000001766	CIA30 domain-containing protein.	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	0.853
ENSLBEP00000006134	ndufs3	ENSLBEP00000006134	ENSLBEP00000034227	CIA30 domain-containing protein.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.986
ENSLBEP00000006134	timmdc1	ENSLBEP00000006134	ENSLBEP00000020546	CIA30 domain-containing protein.	Translocase of inner mitochondrial membrane domain containing 1.	0.976
LOC109996004	ENSLBEP00000006134	ENSLBEP00000017378	ENSLBEP00000006134	Uncharacterized protein.	CIA30 domain-containing protein.	0.936
LOC109996004	cpt2	ENSLBEP00000017378	ENSLBEP00000001384	Uncharacterized protein.	Carnitine palmitoyltransferase 2; Belongs to the carnitine/choline acetyltransferase family.	0.935
LOC109996004	eci2	ENSLBEP00000017378	ENSLBEP00000027436	Uncharacterized protein.	Enoyl-CoA delta isomerase 2.	0.968
LOC109996004	ecsit	ENSLBEP00000017378	ENSLBEP00000025446	Uncharacterized protein.	ECSIT signalling integrator.	0.970
LOC109996004	etfa	ENSLBEP00000017378	ENSLBEP00000023821	Uncharacterized protein.	Electron transfer flavoprotein subunit alpha.	0.940
LOC109996004	ndufaf1	ENSLBEP00000017378	ENSLBEP00000017607	Uncharacterized protein.	NADH:ubiquinone oxidoreductase complex assembly factor 1.	0.936
LOC109996004	ndufaf3	ENSLBEP00000017378	ENSLBEP00000027297	Uncharacterized protein.	NADH:ubiquinone oxidoreductase complex assembly factor.	0.945
LOC109996004	ndufs2	ENSLBEP00000017378	ENSLBEP00000001766	Uncharacterized protein.	NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.	0.941
LOC109996004	ndufs3	ENSLBEP00000017378	ENSLBEP00000034227	Uncharacterized protein.	NADH:ubiquinone oxidoreductase core subunit S3; Belongs to the complex I 30 kDa subunit family.	0.939
LOC109996004	timmdc1	ENSLBEP00000017378	ENSLBEP00000020546	Uncharacterized protein.	Translocase of inner mitochondrial membrane domain containing 1.	0.945
cpt2	LOC109996004	ENSLBEP00000001384	ENSLBEP00000017378	Carnitine palmitoyltransferase 2; Belongs to the carnitine/choline acetyltransferase family.	Uncharacterized protein.	0.935
cpt2	eci2	ENSLBEP00000001384	ENSLBEP00000027436	Carnitine palmitoyltransferase 2; Belongs to the carnitine/choline acetyltransferase family.	Enoyl-CoA delta isomerase 2.	0.453
eci2	LOC109996004	ENSLBEP00000027436	ENSLBEP00000017378	Enoyl-CoA delta isomerase 2.	Uncharacterized protein.	0.968
eci2	cpt2	ENSLBEP00000027436	ENSLBEP00000001384	Enoyl-CoA delta isomerase 2.	Carnitine palmitoyltransferase 2; Belongs to the carnitine/choline acetyltransferase family.	0.453