STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110005834Xeroderma pigmentosum, complementation group A. (275 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
    
 0.986
ercc1
Excision repair cross-complementation group 1.
    
 0.983
ercc4
Excision repair cross-complementation group 4.
    
 0.983
ercc3
Excision repair cross-complementation group 3.
    
 0.977
gtf2h1
General transcription factor IIH, polypeptide 1.
    
 0.971
ercc2
Excision repair cross-complementation group 2.
    
 0.966
LOC109979124
Helicase ATP-binding domain-containing protein.
    
 0.966
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.950
gtf2h3
General transcription factor IIH, polypeptide 3.
   
 0.940
gtf2h4
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.936
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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