STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110002943Empty spiracles homeobox 1. (230 aa)    
Predicted Functional Partners:
bsx
Brain-specific homeobox.
   
 
0.833
dnmt1
DNA (cytosine-5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
      
 0.546
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
    
 
 0.545
dicer1
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.
     
 0.491
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
    
  0.475
ENSLBEP00000007288
Tudor domain containing 12.
    
  0.475
DDX5
DEAD-box helicase 5; Belongs to the DEAD box helicase family.
    
  0.475
ddx59
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59.
    
  0.475
LOC110001279
DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.
    
  0.475
GPR149
G protein-coupled receptor 149.
    
  0.475
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.