STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLBEP00000018985Uncharacterized protein. (88 aa)    
Predicted Functional Partners:
sgcg
Sarcoglycan, gamma.
   
 0.673
ENSLBEP00000037803
Uncharacterized protein.
   
 0.673
LOC109981860
Sarcoglycan, alpha.
   
 
 0.651
SGCZ
Sarcoglycan zeta.
   
 0.613
sgce
Sarcoglycan, epsilon.
   
 
 0.608
ENSLBEP00000000810
Uncharacterized protein.
   
 0.605
ENSLBEP00000025395
annotation not available
   
 0.605
LOC109993396
Uncharacterized protein.
   
 0.592
LOC109980963
Peptidase S72 domain-containing protein.
     
 0.563
ENSLBEP00000020769
Peptidase S72 domain-containing protein.
     
 0.563
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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