ENSLBEP00000019049 protein (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSLBEP00000019049

Obscurin-like 1a. (1268 aa)

Predicted Functional Partners:

ENSLBEP00000002404

0.894

tex10

0.766

ENSLBEP00000033866

0.740

LOC109978095

0.719

LOC109979654

0.719

LOC109983664

0.685

LOC109989518

0.685

LOC109990841

0.685

LOC109996767

0.685

pes1

0.671

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000002404	ENSLBEP00000019049	ENSLBEP00000002404	ENSLBEP00000019049	Uncharacterized protein.	Obscurin-like 1a.	0.894
ENSLBEP00000002404	ENSLBEP00000033866	ENSLBEP00000002404	ENSLBEP00000033866	Uncharacterized protein.	Uncharacterized protein.	0.740
ENSLBEP00000002404	LOC109978095	ENSLBEP00000002404	ENSLBEP00000012521	Uncharacterized protein.	Uncharacterized protein.	0.719
ENSLBEP00000002404	LOC109979654	ENSLBEP00000002404	ENSLBEP00000038617	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.719
ENSLBEP00000002404	LOC109983664	ENSLBEP00000002404	ENSLBEP00000007094	Uncharacterized protein.	Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.685
ENSLBEP00000002404	LOC109989518	ENSLBEP00000002404	ENSLBEP00000013413	Uncharacterized protein.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.685
ENSLBEP00000002404	LOC109990841	ENSLBEP00000002404	ENSLBEP00000028453	Uncharacterized protein.	Uncharacterized protein; Belongs to the calmodulin family.	0.685
ENSLBEP00000002404	LOC109996767	ENSLBEP00000002404	ENSLBEP00000035310	Uncharacterized protein.	Calmodulin.	0.685
ENSLBEP00000002404	pes1	ENSLBEP00000002404	ENSLBEP00000015968	Uncharacterized protein.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.671
ENSLBEP00000002404	tex10	ENSLBEP00000002404	ENSLBEP00000003278	Uncharacterized protein.	Testis expressed 10.	0.766
ENSLBEP00000019049	ENSLBEP00000002404	ENSLBEP00000019049	ENSLBEP00000002404	Obscurin-like 1a.	Uncharacterized protein.	0.894
ENSLBEP00000019049	ENSLBEP00000033866	ENSLBEP00000019049	ENSLBEP00000033866	Obscurin-like 1a.	Uncharacterized protein.	0.740
ENSLBEP00000019049	LOC109978095	ENSLBEP00000019049	ENSLBEP00000012521	Obscurin-like 1a.	Uncharacterized protein.	0.719
ENSLBEP00000019049	LOC109979654	ENSLBEP00000019049	ENSLBEP00000038617	Obscurin-like 1a.	WD_REPEATS_REGION domain-containing protein.	0.719
ENSLBEP00000019049	LOC109983664	ENSLBEP00000019049	ENSLBEP00000007094	Obscurin-like 1a.	Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.685
ENSLBEP00000019049	LOC109989518	ENSLBEP00000019049	ENSLBEP00000013413	Obscurin-like 1a.	Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.	0.685
ENSLBEP00000019049	LOC109990841	ENSLBEP00000019049	ENSLBEP00000028453	Obscurin-like 1a.	Uncharacterized protein; Belongs to the calmodulin family.	0.685
ENSLBEP00000019049	LOC109996767	ENSLBEP00000019049	ENSLBEP00000035310	Obscurin-like 1a.	Calmodulin.	0.685
ENSLBEP00000019049	pes1	ENSLBEP00000019049	ENSLBEP00000015968	Obscurin-like 1a.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.671
ENSLBEP00000019049	tex10	ENSLBEP00000019049	ENSLBEP00000003278	Obscurin-like 1a.	Testis expressed 10.	0.766