STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110002486RNA binding protein fox-1 homolog 1; RNA-binding protein that regulates alternative splicing events. (386 aa)    
Predicted Functional Partners:
LOC109986451
RNA binding motif protein 24b.
  
 
 0.803
rbm24
RNA binding motif protein 24a.
  
 
 0.802
LOC109989169
RRM domain-containing protein.
  
 
 0.753
RBM38
RNA binding motif protein 38.
  
 
 0.752
RBPMS
RNA binding protein, mRNA processing factor.
   
 
 0.709
LOC109981826
QKI, KH domain containing, RNA binding 2.
   
 
 0.694
LOC109994582
QKI, KH domain containing, RNA binding a.
   
 
 0.678
LOC109993231
QKI, KH domain containing, RNA binding b.
   
 
 0.678
LOC109993841
RRM domain-containing protein.
  
  
 0.649
ENSLBEP00000022537
RNA binding protein, mRNA processing factor 2b.
   
 
 0.640
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
Server load: low (20%) [HD]