STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109986397CCAAT enhancer binding protein beta. (294 aa)    
Predicted Functional Partners:
LOC109991266
Activating transcription factor 4a.
   
 0.982
LOC109996988
Activating transcription factor 4b.
   
 0.960
ATF4
Activating transcription factor 4.
   
 0.960
myb
V-myb avian myeloblastosis viral oncogene homolog.
    
 0.947
ddit3
DNA-damage-inducible transcript 3.
    
 0.920
ENSLBEP00000035391
CCAAT enhancer binding protein gamma.
    
0.903
atf3
Activating transcription factor 3.
   
 0.877
runx1
Runt-related transcription factor.
    
 0.876
runx3
Runt-related transcription factor.
    
 0.876
ENSLBEP00000023724
RUNX family transcription factor 2b.
    
 0.876
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.