ENSLBEP00000020008 protein (Labrus bergylta)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSLBEP00000020008

Uncharacterized protein. (453 aa)

Predicted Functional Partners:

trip12

0.824

LOC109982950

0.792

LOC109976847

0.784

uba52

0.784

rps27a

0.765

atg7

0.684

trrap

0.640

zfand4

0.626

LOC110002099

0.623

ENSLBEP00000007465

0.623

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLBEP00000007465	ENSLBEP00000020008	ENSLBEP00000007465	ENSLBEP00000020008	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.623
ENSLBEP00000007465	LOC109976847	ENSLBEP00000007465	ENSLBEP00000007421	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.934
ENSLBEP00000007465	LOC109982950	ENSLBEP00000007465	ENSLBEP00000032776	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.901
ENSLBEP00000007465	LOC110002099	ENSLBEP00000007465	ENSLBEP00000006393	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.409
ENSLBEP00000007465	atg7	ENSLBEP00000007465	ENSLBEP00000033851	Ubiquitin-like domain-containing protein.	ATG7 autophagy related 7 homolog (S. cerevisiae).	0.716
ENSLBEP00000007465	rps27a	ENSLBEP00000007465	ENSLBEP00000000668	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.959
ENSLBEP00000007465	trip12	ENSLBEP00000007465	ENSLBEP00000035858	Ubiquitin-like domain-containing protein.	Thyroid hormone receptor interactor 12.	0.967
ENSLBEP00000007465	trrap	ENSLBEP00000007465	ENSLBEP00000035085	Ubiquitin-like domain-containing protein.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.759
ENSLBEP00000007465	uba52	ENSLBEP00000007465	ENSLBEP00000037051	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.933
ENSLBEP00000007465	zfand4	ENSLBEP00000007465	ENSLBEP00000008592	Ubiquitin-like domain-containing protein.	Zinc finger, AN1-type domain 4.	0.430
ENSLBEP00000020008	ENSLBEP00000007465	ENSLBEP00000020008	ENSLBEP00000007465	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.623
ENSLBEP00000020008	LOC109976847	ENSLBEP00000020008	ENSLBEP00000007421	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.784
ENSLBEP00000020008	LOC109982950	ENSLBEP00000020008	ENSLBEP00000032776	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.792
ENSLBEP00000020008	LOC110002099	ENSLBEP00000020008	ENSLBEP00000006393	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.623
ENSLBEP00000020008	atg7	ENSLBEP00000020008	ENSLBEP00000033851	Uncharacterized protein.	ATG7 autophagy related 7 homolog (S. cerevisiae).	0.684
ENSLBEP00000020008	rps27a	ENSLBEP00000020008	ENSLBEP00000000668	Uncharacterized protein.	Ribosomal protein S27a.	0.765
ENSLBEP00000020008	trip12	ENSLBEP00000020008	ENSLBEP00000035858	Uncharacterized protein.	Thyroid hormone receptor interactor 12.	0.824
ENSLBEP00000020008	trrap	ENSLBEP00000020008	ENSLBEP00000035085	Uncharacterized protein.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.640
ENSLBEP00000020008	uba52	ENSLBEP00000020008	ENSLBEP00000037051	Uncharacterized protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.784
ENSLBEP00000020008	zfand4	ENSLBEP00000020008	ENSLBEP00000008592	Uncharacterized protein.	Zinc finger, AN1-type domain 4.	0.626