STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110000063RING-type domain-containing protein. (308 aa)    
Predicted Functional Partners:
msh4
MutS homolog 4.
   
 
 0.597
tex11
Testis expressed 11.
    
 
 0.594
ENSLBEP00000034304
Rad21_Rec8_N domain-containing protein.
    
 
 0.594
spo11
SPO11 initiator of meiotic double stranded breaks.
   
 
 0.572
sycp3
Synaptonemal complex protein 3.
      
 0.551
mlh3
MutL_C domain-containing protein.
      
 0.546
ENSLBEP00000008890
Helicase for meiosis 1.
      
 0.538
ccnb1ip1
Cyclin B1 interacting protein 1.
   
  
 0.518
nsmce2
NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase.
   
 
 0.438
rec114
REC114 meiotic recombination protein.
    
 
 0.429
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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