STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110000637UPAR/Ly6 domain-containing protein. (125 aa)    
Predicted Functional Partners:
c9
Complement component 9.
    
 0.742
c6
Complement component 6.
   
 
  0.637
stx5
Syntaxin 5A; Belongs to the syntaxin family.
     
 0.631
cd55
Uncharacterized protein.
     
 0.626
tmed2
Transmembrane p24 trafficking protein 2.
    
  0.595
sec24d
SEC24 homolog D, COPII coat complex component.
     
 0.581
LOC109993328
SEC24 homolog C, COPII coat complex component.
     
 0.581
LOC109986713
SEC24 homolog B, COPII coat complex component.
     
 0.557
sec24a
SEC24 homolog A, COPII coat complex component.
     
 0.557
NSF
N-ethylmaleimide-sensitive factor a.
   
 
  0.526
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.