STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf41Ring finger protein 41. (318 aa)    
Predicted Functional Partners:
usp8
Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.
    
 0.990
LOC109984903
Ubiquitin specific peptidase 21; Belongs to the peptidase C19 family.
    
 0.931
LOC109996713
Ubiquitin carboxyl-terminal hydrolase.
    
 0.931
LOC109998955
Ubiquitin carboxyl-terminal hydrolase.
    
 0.931
birc6
Baculoviral IAP repeat containing 6.
    
 0.925
ENSLBEP00000032852
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.925
asb6
Ankyrin repeat and SOCS box containing 6.
   
 0.915
egfr
Receptor protein-tyrosine kinase.
    
 0.910
LOC109992267
Receptor protein-tyrosine kinase.
    
 0.910
rps27a
Ribosomal protein S27a.
    
 0.903
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.