STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109992048Uncharacterized protein. (247 aa)    
Predicted Functional Partners:
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.751
LOC109984403
Uncharacterized protein.
   
 
 0.656
tent4b
Terminal nucleotidyltransferase 4B.
   
 
 0.656
tent4a
Terminal nucleotidyltransferase 4A.
   
 
 0.656
mrpl16
Mitochondrial ribosomal protein L16.
   
  0.472
ipo7
Importin 7.
   
 
 0.453
LOC109984596
Importin 8.
   
 
 0.453
mak16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
   0.448
gtpbp4
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
   0.429
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 
 0.425
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.