STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110003005Uncharacterized protein; Belongs to the glycosyltransferase 47 family. (525 aa)    
Predicted Functional Partners:
ext2
Exostosin glycosyltransferase 2; Belongs to the glycosyltransferase 47 family.
    
0.976
extl2
Exostosin-like glycosyltransferase 2.
    
0.912
extl3
Exostosin-like glycosyltransferase 3; Belongs to the glycosyltransferase 47 family.
   
0.878
LOC109993323
Threonine aldolase 1.
     
 0.832
psat1
Phosphoserine aminotransferase.
     
 0.821
LOC110004670
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.626
LOC110000245
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.626
SDC3
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
   
 
 0.576
LOC109989533
PALP domain-containing protein.
     
 0.575
SDS
Serine dehydratase.
     
 0.575
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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