STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf6PHD finger protein 6. (362 aa)    
Predicted Functional Partners:
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.888
rbbp5
Retinoblastoma binding protein 5.
   
 0.882
ENSLBEP00000004166
WD_REPEATS_REGION domain-containing protein.
   
 0.857
LOC110002888
Retinoblastoma binding protein 4, like.
   
 0.857
RBBP4
RB binding protein 4, chromatin remodeling factor.
   
 0.857
ENSLBEP00000033219
WD_REPEATS_REGION domain-containing protein.
   
 0.857
eed
Embryonic ectoderm development.
   
 0.817
suz12
SUZ12 polycomb repressive complex 2 subunit b.
   
 0.783
LOC109994092
VEFS-Box domain-containing protein.
   
 0.783
ENSLBEP00000019166
ANK_REP_REGION domain-containing protein.
    
 0.771
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.