STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109985589Vitamin D receptor a. (425 aa)    
Predicted Functional Partners:
ncoa1
Nuclear receptor coactivator 1.
    
 0.894
LOC110002336
Uncharacterized protein.
    
 0.883
ncoa2
Nuclear receptor coactivator.
    
 0.883
LOC109983896
Nuclear receptor coactivator 3.
    
 0.883
ncoa3
Uncharacterized protein.
    
 0.883
ncor1
Nuclear receptor corepressor 1.
    
 0.851
ncor2
Nuclear receptor corepressor 2.
    
 0.851
LOC109979667
Uncharacterized protein.
    
 0.851
LOC109988834
Nuclear receptor subfamily 1, group D, member 2a.
   
0.837
LOC109986633
Retinoid x receptor, beta b.
   
0.837
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.