STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx8Sorting nexin 8a. (309 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
 0.980
msh3
MutS homolog 3 (E. coli); Component of the post-replicative DNA mismatch repair system (MMR).
    
   0.957
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.896
snx6
Sorting nexin 6.
   
 0.866
LOC109986400
Insulin-like growth factor 2 receptor.
    
 0.862
snx5
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 0.859
LOC110004901
Vps5 domain-containing protein.
   
 0.859
LOC109998059
N-acetylneuraminic acid synthase a.
     
 0.841
LOC109998065
AFP-like domain-containing protein.
     
 0.841
LOC110005350
Sialic acid synthase-like.
     
 0.841
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.