STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLBEP00000022537RNA binding protein, mRNA processing factor 2b. (215 aa)    
Predicted Functional Partners:
RBPMS
RNA binding protein, mRNA processing factor.
  
  
0.787
LOC109982950
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.786
sf3b1
Splicing factor 3b, subunit 1.
   
 0.774
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.760
sf3b2
Splicing factor 3b, subunit 2.
   
 0.760
sf3b4
Splicing factor 3b, subunit 4.
    
 0.754
ncbp2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.752
snrpg
Small nuclear ribonucleoprotein G.
   
 0.725
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.724
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.723
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.