STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zc3hc1Zinc finger, C3HC-type containing 1. (504 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.918
rbx1
Zf-rbx1 domain-containing protein.
    
 0.806
cul1
Cullin 1b; Belongs to the cullin family.
    
  0.736
ENSLBEP00000007062
GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.
   
    0.731
rnf7
Ring finger protein 7.
    
 0.679
mthfr
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
     
 0.662
ccnb1
Cyclin B1; Belongs to the cyclin family.
   
 
 0.604
LOC110001534
Cyclin B2; Belongs to the cyclin family.
   
 
 0.591
LOC109992113
Cyclin N-terminal domain containing 2; Belongs to the cyclin family.
   
 
 0.591
CCNB2
Cyclin B2; Belongs to the cyclin family.
   
 
 0.591
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.