STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110005944Uncharacterized protein. (665 aa)    
Predicted Functional Partners:
ENSLBEP00000024553
C-type lectin domain-containing protein.
   
   0.544
LOC109992141
Uncharacterized protein.
   
   0.544
fam20b
FAM20B glycosaminoglycan xylosylkinase.
     
 0.540
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.540
nudt9
Nudix (nucleoside diphosphate linked moiety X)-type motif 9.
      
 0.540
samd7
Sterile alpha motif domain containing 7.
     
 0.529
LOC109989500
Apolipoprotein Ba.
   
 
  0.499
ENSLBEP00000010726
Uncharacterized protein.
   
 
  0.499
LOC109989657
Vitellogenin domain-containing protein.
   
 
  0.499
ENSLBEP00000026611
Uncharacterized protein.
   
 
  0.499
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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