STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLBEP00000022732HID1 domain containing. (286 aa)    
Predicted Functional Partners:
usp40
Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family.
    
 
 0.781
usp7
Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.
    
 
 0.781
nup155
Nucleoporin 155.
    
 
 0.736
ENSLBEP00000002753
Uncharacterized protein.
   
 
 0.703
LOC110002514
GLE1 RNA export mediator.
   
 
 0.703
NUP54
Nucleoporin 54.
    
 
 0.703
nup214
Uncharacterized protein.
    
 
 0.698
nxf1
Zgc:153681.
    
 
 0.683
nup133
Nucleoporin 133.
   
 
 0.680
rae1
Ribonucleic acid export 1.
    
 
 0.673
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.