STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgsm3Small G protein signaling modulator 3. (726 aa)    
Predicted Functional Partners:
pc
Pyruvate carboxylase b.
     
 0.670
smim7
Small integral membrane protein 7.
    
   0.605
cog4
Component of oligomeric golgi complex 4.
    
   0.605
otud3
OTU deubiquitinase 3.
      
 0.553
nubpl
Nucleotide binding protein-like.
      
 0.549
LOC109991530
Ufm1-specific peptidase 2.
      
 0.549
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
 
    
 0.501
pelo
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
   
  
 0.500
ENSLBEP00000032503
Mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase.
 
      0.493
CCDC170
Uncharacterized protein.
      
 0.487
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
Server load: low (30%) [HD]