STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nedd4lE3 ubiquitin-protein ligase. (898 aa)    
Predicted Functional Partners:
ubb
Ubiquitin B.
    
 0.912
rps27a
Ribosomal protein S27a.
    
 0.911
igf1r
Tyrosine-protein kinase receptor.
   
 0.881
fgfr2
Fibroblast growth factor receptor.
    
 0.876
ENSLBEP00000016740
Recep_L_domain domain-containing protein.
   
 0.875
egfr
Receptor protein-tyrosine kinase.
    
 0.875
LOC109992267
Receptor protein-tyrosine kinase.
    
 0.875
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.874
dlg3
Discs, large homolog 3 (Drosophila); Belongs to the MAGUK family.
    
  0.866
ENSLBEP00000004674
Uncharacterized protein.
    
 0.865
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.