STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmp13Matrix metallopeptidase 13b. (470 aa)    
Predicted Functional Partners:
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.892
LOC109993327
TIMP metallopeptidase inhibitor 2a.
   
 0.848
LOC109994449
TIMP metallopeptidase inhibitor 2b.
   
 0.847
mmp9
Matrix metallopeptidase 9.
   
0.750
LOC109988782
Matrix metallopeptidase 14a (membrane-inserted).
  
0.741
LOC109988080
Heparin-binding EGF-like growth factor a.
    
 0.711
LOC110000815
Vascular endothelial growth factor Aa; Belongs to the PDGF/VEGF growth factor family.
     
 0.706
LOC109990259
Endothelin 1.
     
 0.703
ncf4
Neutrophil cytosolic factor 4.
   
 
 0.689
LOC109984883
Cytochrome b-245, alpha polypeptide.
     
 0.688
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.