STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109983897Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (458 aa)    
Predicted Functional Partners:
LOC109981162
Serine and arginine rich splicing factor 9.
    
 0.898
LOC109998231
Uncharacterized protein.
    
 0.866
LOC109999271
Serine and arginine rich splicing factor 1a.
    
 0.866
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
   0.857
LOC109987166
Serine and arginine rich splicing factor 6a.
    
 0.843
LOC109978875
Serine and arginine rich splicing factor 5b.
    
 0.843
ENSLBEP00000022319
RRM domain-containing protein.
    
 0.843
LOC110005132
Serine and arginine rich splicing factor 5a.
    
 0.843
ENSLBEP00000022335
RRM domain-containing protein.
    
 0.843
snrnp70
RRM domain-containing protein.
    
 0.832
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.