STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109994312Uncharacterized protein. (467 aa)    
Predicted Functional Partners:
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
   
0.983
ppard
Peroxisome proliferator-activated receptor delta b.
    
0.940
ENSLBEP00000029271
NR LBD domain-containing protein.
    
0.939
PPARG
Peroxisome proliferator activated receptor gamma.
    
0.939
ppara
Peroxisome proliferator-activated receptor alpha a.
    
0.934
ENSLBEP00000017934
Nuclear receptor subfamily 1, group H, member 5.
   
0.931
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
0.931
ncor1
Nuclear receptor corepressor 1.
    
 0.928
ncor2
Nuclear receptor corepressor 2.
    
 0.928
LOC110002336
Uncharacterized protein.
   
 0.867
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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