STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traipTRAF-interacting protein. (449 aa)    
Predicted Functional Partners:
fancd2
FA complementation group D2.
   
 
 0.674
LOC109995112
TNF receptor-associated factor.
    
 
 0.662
LOC109996590
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 
 0.662
LOC109998929
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 
 0.662
lrr1
Zgc:77287.
   
 
 0.618
traf3
TNF receptor-associated factor 3.
    
 
 0.608
LOC110002709
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 
 0.608
ENSLBEP00000020343
MCM_N domain-containing protein.
    
 
 0.593
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
   0.590
usp37
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.587
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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