STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109988506Derlin-2. (239 aa)    
Predicted Functional Partners:
derl1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
0.985
erlec1
Endoplasmic reticulum lectin 1.
    
 0.974
os9
OS9 endoplasmic reticulum lectin.
    
 0.974
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
   
 0.971
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
   
 0.965
AMFR
Autocrine motility factor receptor b.
   
 0.963
LOC109984849
Uncharacterized protein.
   
 0.963
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 
 0.958
LOC109994608
Uncharacterized protein.
   
 0.953
LOC110005030
Uncharacterized protein.
   
 0.953
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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