STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109981600DEAH (Asp-Glu-Ala-His) box helicase 15. (747 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.989
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
   
 0.982
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.979
rbm17
RNA binding motif protein 17.
   
 0.978
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.974
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.973
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.972
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 0.970
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.968
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.967
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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