grm1 protein (Labrus bergylta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

grm1

Glutamate receptor, metabotropic 1a. (1169 aa)

Predicted Functional Partners:

HOMER1

0.907

LOC109998752

0.907

LOC109991965

0.904

homer2

0.869

homer3

0.868

ENSLBEP00000033866

0.865

LOC110001032

0.863

LOC110001033

0.857

LOC110004877

0.857

AGAP2

0.854

Your Current Organism:

Labrus bergylta

NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGAP2	grm1	ENSLBEP00000021970	ENSLBEP00000026121	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.	Glutamate receptor, metabotropic 1a.	0.854
ENSLBEP00000033866	LOC110001032	ENSLBEP00000033866	ENSLBEP00000008718	Uncharacterized protein.	Uncharacterized protein.	0.786
ENSLBEP00000033866	LOC110001033	ENSLBEP00000033866	ENSLBEP00000008658	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.786
ENSLBEP00000033866	LOC110004877	ENSLBEP00000033866	ENSLBEP00000009855	Uncharacterized protein.	Guanine nucleotide-binding protein subunit alpha-14-like.	0.786
ENSLBEP00000033866	grm1	ENSLBEP00000033866	ENSLBEP00000026121	Uncharacterized protein.	Glutamate receptor, metabotropic 1a.	0.865
HOMER1	LOC109991965	ENSLBEP00000002162	ENSLBEP00000019656	Homer scaffold protein 1.	WH1 domain-containing protein.	0.976
HOMER1	grm1	ENSLBEP00000002162	ENSLBEP00000026121	Homer scaffold protein 1.	Glutamate receptor, metabotropic 1a.	0.907
HOMER1	homer2	ENSLBEP00000002162	ENSLBEP00000032529	Homer scaffold protein 1.	Homer scaffold protein 2.	0.859
HOMER1	homer3	ENSLBEP00000002162	ENSLBEP00000037159	Homer scaffold protein 1.	Homer scaffold protein 3b.	0.753
LOC109991965	HOMER1	ENSLBEP00000019656	ENSLBEP00000002162	WH1 domain-containing protein.	Homer scaffold protein 1.	0.976
LOC109991965	LOC109998752	ENSLBEP00000019656	ENSLBEP00000019729	WH1 domain-containing protein.	Homer scaffold protein 1b.	0.977
LOC109991965	grm1	ENSLBEP00000019656	ENSLBEP00000026121	WH1 domain-containing protein.	Glutamate receptor, metabotropic 1a.	0.904
LOC109991965	homer2	ENSLBEP00000019656	ENSLBEP00000032529	WH1 domain-containing protein.	Homer scaffold protein 2.	0.869
LOC109991965	homer3	ENSLBEP00000019656	ENSLBEP00000037159	WH1 domain-containing protein.	Homer scaffold protein 3b.	0.758
LOC109998752	LOC109991965	ENSLBEP00000019729	ENSLBEP00000019656	Homer scaffold protein 1b.	WH1 domain-containing protein.	0.977
LOC109998752	grm1	ENSLBEP00000019729	ENSLBEP00000026121	Homer scaffold protein 1b.	Glutamate receptor, metabotropic 1a.	0.907
LOC109998752	homer2	ENSLBEP00000019729	ENSLBEP00000032529	Homer scaffold protein 1b.	Homer scaffold protein 2.	0.869
LOC109998752	homer3	ENSLBEP00000019729	ENSLBEP00000037159	Homer scaffold protein 1b.	Homer scaffold protein 3b.	0.753
LOC110001032	ENSLBEP00000033866	ENSLBEP00000008718	ENSLBEP00000033866	Uncharacterized protein.	Uncharacterized protein.	0.786
LOC110001032	LOC110001033	ENSLBEP00000008718	ENSLBEP00000008658	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 14a.	0.830