STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC109989161Nipped-B protein. (2314 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.984
RBM20
RNA binding motif protein 20.
   
 0.971
smc1a
Structural maintenance of chromosomes protein.
   
 0.967
LOC110001862
Structural maintenance of chromosomes protein.
   
 0.967
mau2
MAU2 sister chromatid cohesion factor.
    
 0.951
pds5b
PDS5 cohesin associated factor B.
   
 0.947
pds5a
PDS5 cohesin associated factor A.
   
 0.947
LOC110002449
Uncharacterized protein.
   
 0.945
LOC109985592
RAD21 cohesin complex component like 1.
   
 0.945
rad21
RAD21 cohesin complex component a.
   
 0.945
Your Current Organism:
Labrus bergylta
NCBI taxonomy Id: 56723
Other names: L. bergylta, ballan wrasse
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.